You are viewing the OBO Foundry AgroPortal Slice at obo-foundry.agroportal.lirmm.fr. To see all of the ontologies in AgroPortal visit the full site.

Projects

Browse the ontology-based projects in the community: Each project description is linked to IBC AgroPortal ontologies that the project uses. Use the ‘Add Project’ link to add your ontology-based project to this list and to link it to IBC AgroPortal ontologies. Your project will then appear on the pages that list the details for the ontologies that you selected. We also invite you to review ontologies that you used in your project.



Project Description Contacts Institutions Ontologies
AgBase
Home Page   
AgBase is a curated resource for functional analysis of agricultural plant and animal gene products including Gene Ontology annotations. Fiona McCarthy (fionamcc@email.arizona.edu) University of Arizona 2
Agronomic Linked Data
Home Page   
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The... Pierre Larmande (pierre.larmande@ird.fr) IRD 9
ANAEE Semantics
Home Page   
The AnaEE semantics group aims to provide a semantics vocabularies (thesaurus and ontology for the description of the study of continental ecosystems and their biodiversity. anaee_thesaurus@inra.fr CNRS INRA 0
Animal Quantitative Trait Loci database
Home Page   
The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL... Zhiliang Hu (zhu@iastate.edu) Iowa State University 1
Annotated tables of the Web
Home Page   
@Web is a semantic web application using a predefined vocabulary (called ontology in the following) organized as a taxonomy. @Web... Patrice Buche (patrice.buche@supagro.inra.fr) INRA 0
Annotation des Bulletins de Santé du Végétal
Home Page   
Générer un jeu de données d'annotations des BSV pour produire différentes analyses. Ce projet fait parti du projet VESPA... Catherine Roussey (catherine.roussey@irstea.fr) Irstea 0
Bioinformatics Resource for Invertebrate Vectors of Human Pathogens
Home Page   
VectorBase is a National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center (BRC) providing genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens. Contact Info (info@vectorbase.org) University of Notre Dame 1
Computational Biology Institute
Home Page   
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment. Pierre Larmande (pierre.larmande@ird.fr) University of Montpellier, CNRS, CIRAD, INRIA, IRD, INRA, SupAgro, INSERM 6
Dictionnaire de l'Académie de l'Eau (projet Lexeau®)
Home Page   
Le dictionnaire de l'Académie de l'Eau, lexique bilingue des textes et des données sur l'eau (projet lexeau®) est un projet... Jean-Louis Janin (turennejlj@orange.fr) Académie de l'Eau 0
Dictybase
Home Page   
Central resource for Dictyostelid genomics Rex Chisholm (r-chisholm@northwestern.edu) Northwestern University 3
Echinoderm genomic database
Home Page   
home for genomic information on echinoderms. It either hosts or will soon host sequence and annotation data for species from all of the eleutherozoan echinoderms (sea urchins, sea stars, brittle stars and sea cucumbers). Kathleen Foltz (foltz@lifesci.ucsb.edu) 1
Ecophyto plan
Home Page   
The main goal is to reduce the use of pesticides and plant protection product in France by half by... French Ministry of Agriculture 0
Genome Database for Rosaceae
Home Page   
The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available... Sook Jung (sook_jung@wsu.edu) Washington State University 3
Hardwood Genomics Project
Home Page   
The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information. Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu) University of Tennessee 5
i5k Workspace@NAL
Home Page   
The i5K is an initiative to sequence the genomes of 5,000 arthropod species. Chris Childers (christopher.childers@ars.usda.gov) Agricultural Research Service (USDA ARS) 2
Labex Numev
Home Page   
The Numev Labex was created within the greater construct of rallying the MIPS community (Mathematics, Computer Science, Physics, Systems) around the objective of tackling organic life, health and environmental issues. Clément Jonquet (jonquet@lirmm.fr) University of Montpellier, CNRS, INRIA, INRA, SupAgro 0
Legume Federation
Home Page   
The Legume Federation is an NSF project (link is external) to help foster increased use of data standards, distributed development, and comparative analysis, to support research across the legume family. Steven Cannon (steven.cannon@ars.usda.gov) Iowa State University 0
Legume Information System
Home Page   
The Legume Information System (LIS) contains genetic and genomic data for crop and model legumes. It includes genome browsers for... Steven Cannon (steven.cannon@ars.usda.gov) Agricultural Research Service (USDA ARS) and Résultats de recherche National Clonal Germplasm Repository (NCGR) 4
LOVInra : Linked Open Vocabularies
Home Page   
LOVInra est un service proposé par la Délégation à l’Information Scientifique et Technique. Il s’adresse aux agents INRA qui souhaitent faire connaître des vocabulaires produits dans le cadre de leurs activités. Sophie Aubin (sophie.aubin@versailles.inra.fr) INRA 0
Maize Genetics and Genomics Database
Home Page   
MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays. Lisa Harper (lisaharper@me.com) Agricultural Research Service (USDA ARS) 2
OntoBiotope
Home Page   
L'ambition pour OntoBiotope est de normaliser la description des habitats microbiens au travers d'une ontologie (également appelée OntoBiotope). Claire Nedellec (claire.nedellec@jouy.inra.fr) INRA 0
PeanutBase
Home Page   
PeanutBase contains genetic and genomic data for peanut and its wild relatives. It includes genome browsers, genetic maps, traits, variety images, interactive maps, gene reports, and sequence search tools. Ethy Cannon (ekcannon@iastate.edu) Agricultural Research Service (USDA ARS) and Iowa State University 4
Plant Genome and Systems Biology
Home Page   
The PGSB plant genomics group focuses on the analysis of plant genomes, using bioinformatic techniques. To store and manage the... Klaus Mayer (kmayer@helmholtz-muenchen.de) German Research Center for Environmental Health 2
Planteome
Home Page   
The Planteome Project is a centralized platform where reference ontologies for plants will be used to access plant genomics data. Pankaj Jaiswal (jaiswalp@science.oregonstate.edu) Oregon State University 6
RDA Wheat Interoperability Working Group
Home Page   
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data... Esther Dzalé-Yeumo (edzale@versailles.inra.fr), Richard Fulss (r.fulss@cgiar.org) Research Data Allianca 1
Semantic Indexing of French Biomedical Data Resources
Home Page   
The SIFR project proposes to investigate the scientific and technical challenges in building ontology-based services to leverage biomedical ontologies and terminologies in indexing, mining and retrieval of French biomedical data. Clément Jonquet (jonquet@lirmm.fr) LIRMM (University of Montpellier & CNRS) 0
SoyBase and the Soybean Breeder's Toolbox
Home Page   
Integrating Genetics and Molecular Biology for Soybean Researchers. David Grant (david.grant@ars.usda.gov) USDA-ARS, Ames, IA (https://www.ars.usda.gov) 4
Sélection du blé tendre assisté par marqueur
Home Page   
L’objectif de ce projet est de créer et de maintenir une base de données structurée pour le blé tendre regroupant... Claire Nedellec (claire.nedellec@jouy.inra.fr) FSOV - Fonds de Soutien à l'Obtention Végétale 0
The Arabidopsis Information Resource
Home Page   
The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. TAIR curator (curator@arabidopsis.org) Phoenix Bioinformatics 4
The Crop Ontology project
Home Page   
Crop Ontology is a service of the Integrated Breeding Platform, and targets agricultural data annotation. The project is led by... Elizabeth Arnaud (e.arnaud@cgiar.org) Bioversity International 0
The Triticeae Toolbox
Home Page   
T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP. Clayton Birkett (clb343@cornell.edu) Agricultural Research Service (USDA ARS) 4
VEST-AgroPortal Map of Standards
Home Page   
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and... Valeria Pesce (valeria.pesce@fao.org) Food & Agriculture Organization 14