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| Number of classes: | 562 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 1 |
| Maximum depth: | 9 |
| Maximum number of children: | 72 |
| Average number of children: | 3 |
| Classes with a single child: | 48 |
| Classes with more than 25 children: | 1 |
| Classes with no definition: | 41 |
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Details
| Acronym | EO |
|---|---|
| Visibility | Public |
| Description | The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in vitro plant structures (PO:0000004). A plant treatment is the most specific,and may be a component of a plant growing condition, and the plant study type. The broadest classes are the plant study types where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own and it may also involve instances of biotic and abiotic treatments and different growing conditions. |
| Status | Retired |
| Format | OWL |
| Contact |
Laurel Cooper, cooperl@science.oregonstate.edu Pankaj Jaiswal, jaiswalp@science.oregonstate.edu |
| Home Page | http://planteome.org/ |
| Publications Page | http://wiki.plantontology.org/index.php/Category:Publications |
| Documentation Page | http://wiki.plantontology.org/index.php/Plant_Environment_Ontology_Wiki |
| Categories | Plant Science and Plant Products |
| Groups | OBO Foundry, Rice Data Interoperability working group |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/eo.owl |
|---|---|
| Natural Language | |
| version | 20-10-2016 |
| Release date | 2017-06-06T18:01:33+02:00 |
| notes | This ontology is deprecated. Note this ontology is replaced by http://agroportal.lirmm.fr/ontologies/PECO. Migration Guide from EO to PECO If you are using classes like EO:nnnnnn then you should be able to substitute this for PECO:nnnnnn, as all of the numeric parts of the ID are preserved. For a more robust mechanism, peco.obo contains alt_ids, and peco.owl contains the equivalent replaced_by assertions, which point from an obsoleted EO class to the corresponding PECO class. |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
| has Domain | http://data.agroportal.lirmm.fr/categories/PLANT |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| use Imports | http://purl.obolibrary.org/obo/patterns/eo_pattern.owl, http://purl.obolibrary.org/obo/eo/imports/ro_import.owl, http://purl.obolibrary.org/obo/eo/imports/chebi_import.owl, http://purl.obolibrary.org/obo/eo/imports/ncbitaxon_import.owl |
| has Prior Version | EO/submissions/3 |
| deprecated | true |
| Version IRI | http://purl.obolibrary.org/obo/eo/releases/2015-08-19/eo.owl |
| ontology Related To | GO, http://bioportal.bioontology.org/ontologies/CHEBI, PATO, TO, PO, PR |
| From the same domain than | TO, PO |
| identifier | http://purl.obolibrary.org/obo/eo.owl |
| is Format Of | http://purl.obolibrary.org/obo/eo.obo |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=EO&require_exact_match=true&q= |
| bug Database | https://github.com/Planteome/plant-environment-ontology/issues |
| example Identifier | http://purl.obolibrary.org/obo/EO_0007263 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 20-10-2016 (Parsed, Indexed, Metrics, Annotator) | 06/06/2017 | 06/06/2017 | OWL | CSV | RDF/XML |
| 20-10-2016 (Archived) | 05/13/2017 | 05/13/2017 | OWL |
| 20-10-2016 (Archived) | 10/20/2016 | 10/20/2016 | OWL |
| unknown (Archived) | 02/14/2016 | 02/14/2016 | OWL |
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
Agrisemantics Map of Data Standards
|
This Agrisemantics (previously called VEST-AgroPortal) Map of...
This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
|
Planteome
|
The Planteome Project is a centralized platform where reference...
The Planteome Project is a centralized platform where reference ontologies for plants will be used to access plant genomics data.
|
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
|
Oregon State University |
|
RDA Wheat Interoperability Working Group
|
The Wheat Data Interoperability Working Group aims to provide a...
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards.
The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr
|
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
|
Research Data Alliance |
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